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PUBLICATIONS

1. Ericsson, U. B., Hallberg, B. M., Detitta, G. T., Dekker, N., and Nordlund, P. (2006). Thermofluor-based high-throughput stability optimization of proteins for structural studies. Analytical Biochemistry, 357: 289-298. [PubMed ID: 16962548]

2. Kim, C., Hao, Q., and Gruner, S.M. (2006). Solution of Protein Crystallographic Structures by High-Pressure Cryocooling and Noble-Gas Phasing.  Acta Cryst. D62: 687-694. [Pub Med ID: 16790924]

3. Phizicky, E. M. and Grayhack, E. J. (2006). Proteome-Scale Analysis of Biochemical Activity.  Crit. Rev. Biochem. Mol. Biol. 41: 315-327. [Pub Med ID: 16911958]

4. McPherson, A. and Cudney, R. (2006). Searching for Silver Bullets: An Alternative Strategy for Crystallizing Macromolecules.  J. Structural Biology 156: 387-406. [Pub Med ID: 17101277]

5. Wang, Z., Stalcup, L. D., Harvey, B. J, Weber, J., Chloupkova, M., Dumont, M. E., Dean, M., and Urbatsch, I. L. (2006). Purification and ATP hydrolysis of the putative cholesterol transporters ABCG5 and ABCG8. Biochemistry, 45: 9929-9939. [Pub Med ID: 16893193]

6. White, M. A., Clark, K. M., Grayhack, E. J., and Dumont, M. E. (2007). Characteristics Affecting Expression and Solubilization of Yeast Membrane Proteins. J. Mol. Biol. 365: 621-636. [Pub Med ID:17078969]

7. Chloupková, M., Pickert, A., Lee, J. Y., Souza, S., Trinh, Y. T, Connelly, S. M., Dumont, M. E., Dean, M,, and Urbatsch, I. L. (2007). Expression of 25 human ABC transporters in the yeast Pichia pastoris and characterization of the purified ABCC3 ATPase activity. Biochemistry, 46: 7992-8003. [Pub Med ID: 17569508]

8. Luft, J. R., Wolfley, J. R., Said, M. I., Nagel, R. M., Lauricella, A. M., Smith, J. L., Thayer, M. H., Veatch, C. K., Snell, E. H., Malkowski, M. G., and DeTitta, G. T. (2007). Efficient Optimization of Crystallization Conditions by Manipulation of Drop Volume Ratio and Temperature.  Protein Science, 16: 715-722. [Pub Med ID: 17327388]

9. Larson, S. B., Day, J. S., Cudney, R., and McPherson, A. (2007). A Novel Strategy for the Crystallization of Proteins: X-ray Diffraction Validation. Acta Cryst. D63: 310-318. [Pub Med ID:17327668]

10. Collins, M.C., Quillin, M. L., Hummer, G., Matthews, B. W., and Gruner, S. M. (2007). Structural Rigidity of a Large Cavity-Containing Protein Revealed by High-Pressure Crystallography. J. Mol. Biol. 367: 752-763. [Pub Med ID: 17292912]

11. Malkowski, M. G., Quartley, E., Friedman, A. E., Babulski, J., Kon, Y., Wolfley, J., Said, M., Luft, J. R., Phizicky, E. M., DeTitta, G. T., and Grayhack, E. J. (2007). Blocking S-Adenosylmethionine Synthesis in Yeast Allows Selenomethionine Incorporation and Multiwavelength Anomalous Dispersion Phasing.  Proc. Natl. Acad. Sci., USA. 104: 6678-6683. [Pub Med ID: 17426150]

12. Kim, C., Hao, Q., and Gruner, S. M. (2007). High Pressure Cryocooling for Capillary Sample Cryoprotection and Diffraction Phasing at Long Wavelengths. Acta Cryst. D63: 653-659. [Pub Med ID:17452791]

13. Song, J., Mathew, D., Jacob, S. A., Corbett, L., Moorhead, P., and Soltis, S. M.. (2007). Diffraction-based Automated Crystal Centering. J. Synchrotron Rad. 14: 191-195. [Pub Med ID: 17317920]

14. Larson, S. B., Day, J. S., Cudney, R., and McPherson, A. (2007). A New Crystal Form of Bovine Pancreatic RNase A in Complex with 2'-Deoxyguanosine-5'-monophosphate. Acta Crystallogr. Sect. F Struct. Biol. Cryst. Commun. 63: 728-733. [Pub Med ID: 17768339]

15. McPherson, A., Nguyen, C., Larson, S.B., Day, J.S., and Cudney, B. (2007). Development of an Alternative Approach to Protein Crystallization. J. Struct. Funct. Genomics. 8: 193-198. [Pub Med ID:18038192]

16. Kim, C. U., Chen, Y.-F., Tate, M. W., and Gruner, S. M. (2008). Pressure Induced High-density Amorphous Ice in Protein Crystals. J. Appl. Cryst. 41: 1-7. [URL]

17. Kempkes, R., Stofko, E., Lam, K., and Snell, E. H. (2008). Glycerol concentrations required for the successful vitrification of cocktail conditions in a high-throughput crystallization screen. Acta Crystallogr D Biol Crystallogr. 64: 287-301.  [Pub Med ID: 18323624]

18. Fox, B. G., Goulding, C., Malkowski, M. G., Stewart, L., and Deacon, A. (2008). Structural genomics: from genes to structures with valuable materials and many questions in between. Nature Methods, 5: 129-132.  [Pub Med ID: 18235432]

19. Larson, S.B., Day, J.S., Nguyen, C., Cudney, R., and McPherson, A.  (2008) Progress in the development of an alternative approach to macromolecular crystallization.  Crystal Growth and Design, 8: 3038-3052. [URL]

20. Snell, E. H., Luft, J. R., Potter, S. A., Lauricella, A. M., Gulde, S. M., Malkowski, M. G., Koszelak-Rosenblum, M., Said, M. I., Smith, J. L., Veatch, C. K., Collins, R. J., Franks, G., Thayer, M., Cumbaa, C., Jurisica, I., and DeTitta, G. T. (2008). Establishing a training set through the visual analysis of crystallization trials part I: ~150,000 images. Acta Cryst. D64: 1121-1130. [Pub Med ID: 19020350]

21. Snell, E. H., Lauricella, A. M., Potter, S. A., Luft, J. R., Gulde, S. M., Collins, R. J., Franks, G., Malkowski, M. G., Cumbaa, C., Jurisica, I., and DeTitta, G. T. (2008). Establishing a training set through the visual analysis of crystallization trials part II: Crystal examples. Acta Cryst. D64: 1131-1137. [Pub Med ID: 19020351]

22. Nagel, R. M., Luft, J. R., and Snell, E. H. (2008). AutoSherlock: a program for effective crystallization data analysis. J. Appl. Cryst. 41: 1173-1176. [URL]

23. Snell, E. H., Nagel, R. M., Wojtaszcyk, A., O'Neill, H., Wolfley, J., and Luft, J. R. (2008). The application and use of Chemical Space Mapping to interpret crystallization screening results. Acta Cryst. D64: 1240-1249. [Pub Med ID: 19018100]

24. Price, W. N. 2nd, Chen, Y., Handelman, S. K., Neely, H., Manor, P., Karlin, R., Nair, R., Liu, J., Baran, M., Everett, J., Tong, S. N., Forouhar, F., Swaminathan, S. S., Acton, T., Xiao, R., Luft, J. R., Lauricella, A., Detitta, G. T., Rost, B., Montelione, G. T., and Hunt, J. F. (2009). Understanding the physical properties that control protein crystallization by analysis of large-scale experimental data. Nature Biotechnology, 27: 51-57. [Pub Med ID: 19079241]

25. Larson, S. B., Day, J. S., Nguyen, C., Cudney, R., and McPherson, A. (2009). High-resolution structure of proteinase K cocrystallized with digalacturonic acid. Acta Cryst. F65: 192-198. [Pub Med ID: 19255463]

26. Koszelak-Rosenblum, M., Krol, A., Mozumdar, N., Wunsch, K., Ferin, A., Cook, E., Veatch, C. K., Nagel, R., Luft, J. R., Detitta, G. T., and Malkowski, M. G. (2009). Determination and application of empirically derived detergent phase boundaries to effectively crystallize membrane proteins. Protein Sci. 18: 1828-1839.  [Pub Med ID: 19554626]

27. Larson, S. B., Day, J. S., Nguyen, C., Cudney, R., and McPherson, A. (2009). Structure of pig heart citrate synthase at 1.78Å resolution. Acta Crystallogr. Sect. F Struct. Biol. Cryst. Commun. 65: 430-434.  [Pub Med ID: 19407370]

28. Quartley, E., Alexandrov, A., Mikucki, M., Buckner, F. S., Hol, W. G., DeTitta, G. T., Phizicky, E. M., and Grayhack, E. J. (2009). Heterologous expression of L. major proteins in S. cerevisiae: a test of solubility, purity, and gene recoding. J. Struct. Funct. Genomics. 10: 233-247.  [Pub Med ID: 19701618]

29. Clark, K. M., Fedoriw, N., Robinson, K., Connelly, S. M., Randles, J., Malkowski, M. G., DeTitta, G. T., and Dumont, M. E. (2010). Purification of transmembrane proteins from Saccharomyces cerevisiae for X-ray crystallography. Protein Expr. Purif. [Epub ahead of print] [Pub Med ID: 20045057]

30.  Cumbaa C. A. and Jurisica I. (2010). Protein crystallization analysis on the World Community Grid. J. Struct. Funct. Genomics. [Epub ahead of print]  [Pub Med ID: 20072819]

31. Larson, S. B., Day, J. S., Nguyen, C., Cudney, R., and McPherson, A. (2010). Structure of bovine pancreatic ribonuclease complexed with uridine 5'-monophosphate at 1.60Å resolution. Acta Crystallogr. Sect. F Struct. Biol. Cryst. Commun. 66: 113-120.

 

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